PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23406
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 167aa    MW: 18793.5 Da    PI: 7.4403
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23406genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000115173123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C++C + F ++  L  H++ H
  Tp57577_TGAC_v2_mRNA23406 51 FSCNYCQRKFYSSQALGGHQNAH 73
                               89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-64778No hitNo description
PROSITE profilePS5015711.0945178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MNNFHLNTSL HLNQPGHNNE NMNHNLNLEL VLEPSSSSSS SSSPIIEQRV FSCNYCQRKF  60
YSSQALGGHQ NAHKLERTLA KKSWEISSAM QSSNYVELPE HPSSNFNSHF DHNNHVMRYG  120
GGGRKDKFSY GNSKEGHVAS WSRGYNTTTS EHVQEDISQL DLSLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610140.22e-68zinc finger protein
SwissprotQ392614e-28ZFP2_ARATH; Zinc finger protein 2
TrEMBLG7JVH82e-68G7JVH8_MEDTR; Uncharacterized protein
STRINGGLYMA13G01090.22e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-21zinc finger protein 2